PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G068700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 236aa    MW: 26564.4 Da    PI: 9.0509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G068700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16135225199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v +  +l lp +f++++  +k+   t+tl de+ +++e ++    ++++  l++GW +F+ ++g+ +gD+ vF+l++ ++f 
  Brast02G068700.1.p 135 FVKRMLHSHVVRGFWLGLPSHFCDSYL-PKHD-STITLVDEKDEEFETNY--LAYKKG--LSGGWAGFALSHGILDGDSAVFQLIKPTTF- 218
                         89************************4.3434.49***************..555555..9***********************986777. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v+++r+
  Brast02G068700.1.p 219 -KVHIIRA 225
                         .9999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-18126226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23128225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-24133224No hitNo description
PROSITE profilePS5086311.632135226IPR003340B3 DNA binding domain
PfamPF023625.4E-15135225IPR003340B3 DNA binding domain
SMARTSM010197.3E-17135226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAIEKGMSPY EAVRERTVQE NKRKMEALNL HHLSAAVAHA PKTPSPMKHK RRRIIEAAVP  60
APSPPRRSRR LAHLPEVKYA EVAPDSERMK RWSPRKPAEI MCWGSGGSIS MEARLEAARK  120
AEELESQLDP EFPSFVKRML HSHVVRGFWL GLPSHFCDSY LPKHDSTITL VDEKDEEFET  180
NYLAYKKGLS GGWAGFALSH GILDGDSAVF QLIKPTTFKV HIIRATVDDD NKESE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229077.11e-166PREDICTED: B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-140Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLI1H8X51e-166I1H8X5_BRADI; Uncharacterized protein
STRINGBRADI1G72330.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-44B3 family protein